NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210044_10017045

Scaffold Ga0210044_10017045


Overview

Basic Information
Taxon OID3300025288 Open in IMG/M
Scaffold IDGa0210044_10017045 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7731
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001911Metagenome / Metatranscriptome618Y
F021923Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
Ga0210044_100170454F001911N/AMMKRPIDFEKFKREYKKDFNIPVLSTKEKDIFMYIFFLLRKKISKGIFPELYNSEILFSKSDLKALILKNIVIFQNHKKGWIISMNPNYITKNTKCSFCGAKFNEMVYFRRNSICCPGCGIRMHGSTTAKKVNEYSVAIANIGKVVAIPKLTTSVVKVPIEHVITDVPGNLKITDIVLAPTATERTIQIANQEVIPFQTSKADKLNALSTLKRIEDKKKEANALVIQDNILANFSHMCVNFLKEYFFIQHTFFSVRKYFNLKLTEISKDPRFIANASLKNNTLTEVKNACERLCESEEIRSVTLTEGEDNRCFGMSIPDVCPCM
Ga0210044_100170457F021923N/AMTDFFNNYEFIKKLQNHLTVNKENLLNDFPNNNIEKSLNQLLLSPSNAYLSKKIIPQTFADMTWKFKLIEGQQTLTSPSPREFTLTYESQTSSSIFYYETPISGSCYVECNFVDVEPGTTNCIFLGNANNITSKTYLAIQTFPLSSFRGNKIGDGWVAIMEFDNSNIHNPNVLTWSYDIEPTGIFRLSKNTSTLKLHHNRTYSLGAKTTFIGEDLHAGFFSYAFASSKIKKTTFKNLSCGNY
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