Scaffold Ga0207903_1083423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207903_1083423

Scaffold Ga0207903_1083423

Overview

Basic Information
Taxon OID	3300025287 Open in IMG/M
Scaffold ID	Ga0207903_1083423 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	542
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	17.4274	Long. (^o)	-59.8286	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034345	Metagenome / Metatranscriptome	175	Y
F087760	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207903_10834232	F034345	GAGG	MTDDEHLLEFQHKLWELIRETSPPDESKADILMVSGALLSTCLKLYVQTIGKESTIGMFNVAIESINYTKDSRILH
Ga0207903_10834233	F087760	N/A	MNETEILKRNVRDLQEQLQNSHIRIKKLKAKLMQDEKIITMLRKKP

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