Scaffold Ga0207903_1013039

Overview

Basic Information

• Taxon OID: 3300025287
• Scaffold ID: Ga0207903_1013039
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1633
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 17.4274
  • Long. (^o): -59.8286

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038425	Metagenome	166	Y
F061287	Metagenome	132	Y
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207903_10130391	F075333	AGGAG	MKRNSMRYLEGLVKRGVRMNLRSLKQFRNRERGIDSIVKKIVPTTHKDLMDVTNTARWLMTNAPEEYIYGEMVDIDNAIASNLSYYLRRYANSYIGQLSQ
Ga0207903_10130392	F038425	AGGCGG	MRDGEKSDIHCPKCDALMWWWGYASSSLDKESADIGLGCENPKCGGHEVLPEDVYDAIVIEEER
Ga0207903_10130394	F061287	AGGAG	MDKNDREVMIEQLMKLKLERKILDVMRDTEIRRLFSILKRYVK