Scaffold Ga0208315_1058708

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1058708
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 997
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F026590	Metagenome	197	Y
F032307	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10587081	F032307	AGG	LVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATISGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNA
Ga0208315_10587082	F000730	GAG	LVSELIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDEQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0208315_10587083	F026590	N/A	FTQDIVETIKVNKGNPVDILIELETVVTGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSLLGQ