Scaffold Ga0208315_1027690

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1027690
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1679
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F007978	Metagenome / Metatranscriptome	341	Y
F008820	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10276902	F007978	AGGAGG	MAITFNTDRLQGLEGTTINGVYGRIQSVTVKKYDTDPVSWACLYDVILHASAVKRNATDEYPEWGNRLNSRQIDHFTCTYDPTSNANPYAQAYANLKARLAAGGSPIATSISDA
Ga0208315_10276903	F008820	AGGAG	MANLTPYLTEKYTKMVAEITADLGKTADDLANAQNIIRALKNPDMMVNGASLTLDMVQIMENGDIRLLPPQPAPITETCVKAPEPEKNGKKPEKELVNAS
Ga0208315_10276904	F001034	AGAAGG	MLASQQVYEDAQIQSAKPIGPQAPIPPGVHNIELSWDRHQGYMRIVIGGWEWWFKEYLGKAQVLGCDNKRGRLNLRAIAQINGETLTMWRDPNAPPHEEVEGVRREKTHNRLCYRRATEEWRLRDERMDWNDPNALVFTKSYVGDLNAEWHANDSIAHIYHNGYA