Scaffold Ga0208315_1013412

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1013412
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005219	Metagenome / Metatranscriptome	408	Y
F032720	Metagenome	179	Y
F082924	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10134121	F082924	N/A	GFKATAHKNAIISVREGCEEAGVNEAEIVLAFADYYRDGGRAANGWSDPVAALVRTLPVQINKTRKPTSRPPPKVFSVNSIDYVAMKAAQDARKAGGPPV
Ga0208315_10134123	F005219	GGAGG	MITIRRTCPKCGDEMVVELLRPDPHDAPVPFLVCPCGYWEAAPADIEADLEDRPRMPGF
Ga0208315_10134125	F032720	GAGG	MIIPDYEVGQFVRLNPFQSGADGIRCVCNPDKESGLQAPAITAPELGACWHGPKTTVLRVFEDGGLLLKNRHGFVRGARPDEVCR