Scaffold Ga0208315_1006438

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1006438
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4490
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045194	Metagenome	153	N
F103407	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10064381	F103407	GGAGG	VSLLEKLAHMIGDRKVPIPAMPGFPRYRVSFANRHIVKVILFTVLVSLAAVGTGMYFTIKDVVNATYNWPDPAIYDVTEEGLQMMGTKNPKLEDGSESQTLSIRLGDGIRISTLRIKDSDVGRTGITRSLDISPYTTAVTGALAYLW
Ga0208315_10064382	F045194	N/A	MAEEEEDQKPDKIEPNRVQMTSGDIVRLIIAAPVVFTWLFLGSRIIIAATNSETVLNNVEPLLTVLAVLTIPVTGILQSLFSVGGDKK