NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208315_1005736

Scaffold Ga0208315_1005736


Overview

Basic Information
Taxon OID3300025286 Open in IMG/M
Scaffold IDGa0208315_1005736 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4834
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000563Metagenome1022Y
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F080498Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208315_10057362F000563GGTGGVRYTFKVTEDGKPEIEKEAMSFKKLLKSLVNPNPKWTGFMSYENKKGRWITHSILNGKRI
Ga0208315_10057364F080498AGGAMIKKIIIFHLLLFFIVVLFSCAPRTHVAPKPIEKDNQFMTHLLRNIITQGLDF
Ga0208315_10057365F013896N/AMICDKCNGNGFTLVKGETIQCKKCLSSGELPGTIQPPKYSDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ
Ga0208315_10057366F009536GAGMKQALELMPGELKEEIKSNLENPRSYTRLFIKVLDEIDRMKVVLPKFTALKNNILKINKKNHSKITNEMKHFVPKTQSSISPKDIDYWIQTAKKGDQLVYYTGGTFDRRSVKDESVFRKARNLAMDYDNIPFKNKKYQYRGSVRGEWGCTYKNIITLVQKRVAKEQRDKIWDEEKKKYIPGNIISYPIYNYIMIKQ

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