Scaffold Ga0208315_1005736

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1005736
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4834
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10057362	F000563	GGTGG	VRYTFKVTEDGKPEIEKEAMSFKKLLKSLVNPNPKWTGFMSYENKKGRWITHSILNGKRI
Ga0208315_10057364	F080498	AGGA	MIKKIIIFHLLLFFIVVLFSCAPRTHVAPKPIEKDNQFMTHLLRNIITQGLDF
Ga0208315_10057365	F013896	N/A	MICDKCNGNGFTLVKGETIQCKKCLSSGELPGTIQPPKYSDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ
Ga0208315_10057366	F009536	GAG	MKQALELMPGELKEEIKSNLENPRSYTRLFIKVLDEIDRMKVVLPKFTALKNNILKINKKNHSKITNEMKHFVPKTQSSISPKDIDYWIQTAKKGDQLVYYTGGTFDRRSVKDESVFRKARNLAMDYDNIPFKNKKYQYRGSVRGEWGCTYKNIITLVQKRVAKEQRDKIWDEEKKKYIPGNIISYPIYNYIMIKQ