Scaffold Ga0208315_1003189

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1003189
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7070
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F008596	Metagenome	331	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_100318910	F008596	GGAG	MSGAWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVELVPYISSSGAMTAGESLAVTLEVDSFSVDLLPKRIIVPPIQSGLGTTITQVNPLLEAYECNTGLQEGATSQFILSGTNQIAPTVATNLACALHYSTTPPSRPEHFYHKPDDETNFNTATTTSGNNFTVNDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ
Ga0208315_100318911	F002100	GAGG	MSSFKPALIKPTYDVANYGHDITLPLNCLSGSTVTLTPSTATFVQVLEDSRVPIDEVDLFIMDSDKMAMVHAGNDTDYDESWEWRPDMSAQAYLVSFNFAVGMKVSAYTSGNFKISNVQVIMKQVGGGEGDFTYLNKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFTYLGSAVPKTWTTSSVIMHIHADLAHAFPIFRDQDNMNMIDTGIGL
Ga0208315_100318913	F002150	AGG	LVAIPATVLATEIGKRRTKVSGEFLEQKLGYNFVDLVTKLALFYIIAFLIAKYMEAILYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTAPGQFNPPGWDRQYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVVFYIGWETYKYYKTAKESKKGVDFLTIAIFSLLSLMIGVLGFSKFLGKFSLNKFQEANK