Scaffold Ga0208315_1002740

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208315_1002740

Scaffold Ga0208315_1002740

Overview

Basic Information
Taxon OID	3300025286 Open in IMG/M
Scaffold ID	Ga0208315_1002740 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7825
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (76.92%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)		Depth (m)	1200
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037760	Metagenome	167	Y
F051539	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10027401	F051539	N/A	YRRGQLAGFYVDRREVVTASLDNMSRPELEAKLKEIRDHNIINGEAIGVEVKEITEEKKSQKLLQAKK
Ga0208315_100274018	F037760	AGGA	MLESERRILFEYPDHQIEIEWNGSATFNVFTGGKNVNCFTDYNCKTMEQAQKSSDEWLEEQLKEETLNNADPN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.