Scaffold Ga0208315_1001998

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1001998
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9582
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F100973	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10019983	F100973	GAGG	MAPRPPRDPRTIASPTEKNKQYTILYELYDDCRAMRRAENDALKSRTEEARGTKVELKKARSTVITLTKKDHQKSKEKSAAAYATTAATTLIISYQIVEVSGGWGKWAPVFEHEATIGVLQVLIGSILAFAMRPLQ
Ga0208315_10019984	F020443	GAGG	MSLIEKIGIGFGKKETAKTAKGAVVGGVGAFMYSLLSGLDLMPSALTTPDVVPYVVAALATGVNSIRQFFTNHLS