Scaffold Ga0208315_1001325

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1001325
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12895
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003611	Metagenome	477	Y
F009213	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10013253	F009213	GGAGG	MVDNKKVYLRTTRNLYYKQEKPNLKVYYSYTTPVAFEIDGVLKVSENQWSVTTGRHLTWIDGGNKKSRLKREEFNQLVKQHKPEPNFMKSVSMVSAVFGLMCQNDIKTKNKYQKKFFDKVEGINFPNDWNTLSEEEKSRRLEGATKIGLEK
Ga0208315_10013254	F003611	GAGG	MKELFYAVYFALHFAGAFLGLIIAIHLSFWLGISMFVFFIIKFCLMIPSIEKQI