Scaffold Ga0208048_1025530

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1025530
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1689
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F008236	Metagenome / Metatranscriptome	336	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_10255301	F008236	N/A	ADGTTLPDMWFYTHIYDSRLVAMEKYMAVYASVHNANDKAIATEAGFKLFAWCDSDQKIAPKRPKRKAAAEVWRKSLPKLVILDGEKFITCPEIRRGRGVVTCTPTKGSVDCNLCVKGLANVLFPSH
Ga0208048_10255303	F053106	GGAG	MAKYYVKSGTLEVILSQSNALEAAIAGLLLTNKFDTIDEHFYVDERGYRDYVSADPQTNVIATKSIVRAAGWELSREDDD
Ga0208048_10255304	F006543	GGAG	MQKFAFVVDVVADELDRDSVVDSIRSCLSDSLPDGVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAANPKKSKKELVEA