NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1012177

Scaffold Ga0208048_1012177


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1012177 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2955
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F004837Metagenome / Metatranscriptome421Y
F005845Metagenome / Metatranscriptome388Y
F012449Metagenome / Metatranscriptome280Y
F012656Metagenome / Metatranscriptome278N
F046337Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_10121772F012656GAGMESLMMVISTLCDCIAAVEESNAPNGYAVKMKIVDKINELIDKIEY
Ga0208048_10121774F004837N/AMTQDEFVLAEKHRHYWTEYQAHMYMRLSPEAVHELQTILVAHGRPNTNWWCADCVKSALNYIYQEADQFAQDNQQTVSHALTNPPKQ
Ga0208048_10121775F012449N/AMELILPLLVSSFAALAIAEYHVLPQWWYRTWLGRHKPFSCVTCLSFWLGTCLTLLTCDWVLAPVYGLASAGLTVVILQLTNR
Ga0208048_10121776F001345N/AMAYASDIILDLYRSGEIRKACLTITGGDSLWRDLEQECVLILLEKDPDKILQIHEQGYFKFYVVRLLLNLYRGKNNQFAHKYRHHDTTEEINPNADMTHEEYNSLVDDMWAIAEAEMDSWAKEGAFPYDKELLKLHMATGNMKKLSRETGIPYRSVIYSIEQAKAKIKAAILLNYGTDTPAAGQ
Ga0208048_10121778F046337N/AMEWTRLTPQTMPNKMEEVFIALHDGNYAVAWLVGTQTQTFTNIHRDVWYTHEVSHWMYPQPPKA
Ga0208048_10121779F005845N/AMKPTSTDFRRWQIHIRKACATCLTPDHAETISPWRVNWVLLGHILNAKKA
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