Scaffold Ga0208048_1006002

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1006002
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4993
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F050331	Metagenome / Metatranscriptome	145	N
F066729	Metagenome / Metatranscriptome	126	N
F074804	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_100600210	F074804	GGAGG	MVDGTLNDLRDEFFADIEAGDLVFLQADDGSETNGIARERSWMGWMLADGQEVIEDENYLGHISRKQMTGRAA
Ga0208048_100600211	F066729	AGGAGG	MTIQVPDNSLWQYIERDHIDSDIKKRTWTKFVESHQDEFAEKVSELAEEMWENYINGGDK
Ga0208048_100600213	F049582	GGAGG	MFDKTKIYQDLKTRFKSESDLTLSMMRRAISDLDISNPAALDSIYESVIFYTGDWPEHEGWGSSDSRICVNSVKARLIDCGHLKKAA
Ga0208048_100600216	F050331	GGAGG	MVGNLRKIKRQADRETAIQWLCQKDFEFINEGDGPGLELLDSILADGFKGYGNYTDRELNEAIAERKEMERKFG