Scaffold Ga0208048_1005812

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1005812
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5124
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074373	Metagenome	119	Y
F074452	Metagenome / Metatranscriptome	119	N
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_100581212	F074452	GAGG	MTRLGTDPFTQEETREIQRAQDYWEMSYIDESNRVRYRISRVLVEEDILDLLYCHGHITADQQATTINQARRTDDNRSN
Ga0208048_100581213	F080943	AGGAG	MITEATKERLRELEGQRITIEDELDHLQFTNNLARIVKLEHELDEIKDSIKKITASHTFEDISREELQKESRILQ
Ga0208048_100581214	F083781	GGAGG	MSNRTINIAKFEKEAKDLATKAHGNNPSFTGGSLYVEMRDKDHAELLRADLEQYSNASWGDGDKNSAYGTVVKAYKLGDQNGRTEFVYDFMPGPGATDSDLYHSKMGAMAQEIPPEVETMLEMEAEIARGK
Ga0208048_10058128	F074373	GGAG	LATEMTSNRTRWRTSPSSMPRKDIIDFEIGDNEETMQYFTDLAKKHKKQVLIQAEAMKKVDSIEKLDITEVHDIIKNAQEKAKSEEL