NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1000703

Scaffold Ga0208048_1000703


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1000703 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17828
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F050326Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208048_10007033F001991GGAGGVAIFNKNTLTQISGFDNQIIAGELVYNQRTFYNLTLNNSDGTPRDLTGATITSQILRRQLSNVRDSRYGLTFDIADYSPAPSPVNLTITNQQLATGTFTLVIDESAWSVASADAQLDINASNCVGFSGNIKIALPAAGSTPAEDLIVFLLFLVRSDGVTN
Ga0208048_10007036F050326GAGMTTPMTALAASTIRHGEFVRLVTSTNTYTFCNAASAITVAGVTYSALGGLLSVGEVSREIKATSGDMVISLVGIDPTNSALVLSSNIKGASVEISRGFFDSNFQIITTPTQQFFLRYRGFVTNVGLSEDFNDEMRVRTATVTLSCSSFREVLANRVAGIRTNLQAWQQLYPGDASMSRVAAIAGQFFDFGVPPTTGSQSDSDTSPSENPGSAE

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