Scaffold Ga0208048

Basic Information
Taxon OID	3300025283 Open in IMG/M
Scaffold ID	Ga0208048_1000282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208048_1000282 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27221
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (47.22%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

27221

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (47.22%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Malawi: Central Region
Coordinates	Lat. (^o)	-13.5167	Long. (^o)	34.7703	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

Malawi: Central Region

Coordinates

Lat. (^o)

-13.5167

Long. (^o)

34.7703

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002621	Metagenome / Metatranscriptome	542	Y
F002843	Metagenome / Metatranscriptome	526	Y
F005206	Metagenome / Metatranscriptome	408	Y
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F016803	Metagenome / Metatranscriptome	244	Y
F058105	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_100028214	F058105	N/A	MTPHPTIIAAAKLLKEKWPTCSTWNNEELLNWIGIFNKVRQFGIVQNENGECVGVGAVRFLNSVEEAKDINNNFADGHIAWIEMVVGTEPRAVQTLWLAMMNMCSENVTKLGGVRKGVSRLYDFERYFKLLMNERICYGRNIQSA
Ga0208048_100028220	F002621	GAG	MCSTATLRRIYGMIWLVVLPIFPGCQMTKVVLVPHGDPVMLAKPVKASVYGFDRDKKLVGPSNVTLPAGWYVLPKE
Ga0208048_100028223	F001272	N/A	MITIQLTEQQVQSLLQLIDIAIKAGGYQNAKVGVPLADVIIDAANAAKAQ
Ga0208048_100028224	F002843	N/A	MIDSIPTVQVQVNQNNSLFVTTGIDYDKDGSIVGSEITEQYTLNPGDSLDGQPSEVVAIANALWTADVVAAYQAAVEAAKPVVVADDEPVVEAPVA
Ga0208048_100028228	F014610	GAGG	MPIYTFENKGRSMEHIAPMNTDSIVIKGERWTRQPVARFGVTGFAREAELKDHVKRGFSRMEDRQGSRFESTFTKNQIRKIWDI
Ga0208048_100028229	F010688	N/A	MKPKTATIMVIAVGPRGHHQKLGGAPSSDSACGCEEADNNAPMIAIPVEALSTDTEDGQGAMPEVGDEVMLEDVRGVLKKLDNGEAYIEIQSVNGMPAEYEKTGEDEPMDEKGMREMVAEYDGEETED
Ga0208048_100028232	F016803	N/A	VITLIGRIKAAWTFSRHQKWVDPLPWGKEEAIALNTFLRSEVGKKFKDALLNTVLMQNASAITDRNHLQYSAGFAMGQASLVKVIEVMADQESITGQDSDPDSVTNT
Ga0208048_10002827	F005206	N/A	MKFTVDRSQAEVKPFPGPGEYTVVVSSAKDDGLDKNGNAVVTLKYKGSAGEIVSDRFALKETLMWRVQSLISATEANIDDGQEFDFSVSGAFHGFLSGFIGLSMVIVLEEEKYTDKNGAEQTTLRVRRMKKVPADNDTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208048_1000282

Overview

Ecosystem & Geography

Associated Families

Sequences