NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208030_1069153

Scaffold Ga0208030_1069153


Overview

Basic Information
Taxon OID3300025282 Open in IMG/M
Scaffold IDGa0208030_1069153 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0208030_10691532F015742N/AMDSKKAYEMIKEDIIDKESAYLCTEIERALDRIITYTDPLDDAMFSKIKAHAIKLLKEWH
Ga0208030_10691533F008424N/AITRVISSSTQIMEKKVNILERLLYLTMICGFCFFCGVFYTYYKIDQRLWNEEILKARDIETRYMNYPTKRNYKKDDLNKIIYGQ

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