Basic Information | |
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Taxon OID | 3300025282 Open in IMG/M |
Scaffold ID | Ga0208030_1064493 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 999 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.38 | Long. (o) | 4.65 | Alt. (m) | Depth (m) | 2720 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007978 | Metagenome / Metatranscriptome | 341 | Y |
F075975 | Metagenome | 118 | N |
F095590 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208030_10644931 | F095590 | GGAGG | VTLLSTGTYEDAQYQNDAPIGKQEPIPAGVHSIELSWDRSRGYMRVIIGGKKWWFKEYLGKAQVIGTDNGRGRITLRAMARIDGETLTMYRPPDAEPHPLVQGLERKRTHNRLCYRRSSQ |
Ga0208030_10644932 | F075975 | AGGAG | MPNMGPYLAEKYTKMIEEITNDLGRTADKLAFAQNILRALKNPDALVDGAPLTLERLQVMENGDIRTLPSPPEMTCIEEVTKEFGKRNGKKTESAVAELVEVGSDPA |
Ga0208030_10644933 | F007978 | N/A | FTTDRLQGLPSAVAGVYARIQSVTVKKYDTDPVSWKCLYDVVLHASAALRNASGEYPEWGNRLRSREIDHFTCTYDPTSNSNPYAQAYADLKTKIASIASSITDA |
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