Scaffold Ga0208030_1025142

Overview

Basic Information

• Taxon OID: 3300025282
• Scaffold ID: Ga0208030_1025142
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1905
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F021934	Metagenome	216	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10251421	F005551	GGA	MVLGPSKSVSRAKDGNIYGWSGSYALTSSAVTLLDYTNPSAFYLTRITLGIDWSGISDGEVLSYTINVDDQALFVEKLVVLVNNIGIQPKMFEFIIPPNSTVKIQATESANNGAISCILTGYRI
Ga0208030_10251423	F021934	N/A	MSDETFALIWILSFGLYFLIYTFWIPLKTQRRIENWLRDSESDETLLLALEVIVKRIREQTLMDFEEFMLPKARENLQKFWAGAMGNAAKELKGSEEGSQLSLLHTMTQDLSGQPWYIQAAASKLLPIITKAAAENPKTKADAVMGMGLQK
Ga0208030_10251424	F058540	N/A	LKKRDSYLRVSDDEPLLVTVDLVAKVNISTDGGIKEGVRVTAREVITKRDGDEFTFHPNQEPKVKESYSTSSFYLLKDFESASHWPKEGVFYWVWKASDGLRWEEA