Scaffold Ga0208030_1018778

Overview

Basic Information

• Taxon OID: 3300025282
• Scaffold ID: Ga0208030_1018778
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2329
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10187781	F002100	N/A	VLDDSRVPVDEVNQFITDSDKMALVHAGNDTDFDETWEWLPDMSFNAYKASFSLAVAMKVSAYTSGNFAIDTVQLTMKTVGGGEGDEVIVDKIVNPGMSNMTSATEQVAILNVDKKTSTKISDKEVTIQVKVNTSSGVGTYQCGIVPLFCYFGSAVPKTWTTSCVVVHAHADLAHAFPIFRDEDN
Ga0208030_10187782	F008596	GAG	MSGAWDIATATSLLTGVAKTQINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYIDSFSVDLLPKRIIVPPIQAGLGTHINIVAPLLDSYECNTGLQEGATSQFIISGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSFSGYGTFSSNDFGNSLPLKVPIQPGACGLAGTMTPGTLQLASYHNTHMPMKTSCKISTSFTNDITQSATSRFIMGVGYTKQG
Ga0208030_10187783	F003270	N/A	MARKRRRRSSKKRNGSKSIKSIVRQVVNKASAPIAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVAFSDQYNPSPSGNPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPSGYVSTANVTPNVMVQNRATTQRRNLQFQQNLGYDPSTVSALR