Scaffold Ga0208030_1013698

Overview

Basic Information

• Taxon OID: 3300025282
• Scaffold ID: Ga0208030_1013698
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2873
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F016759	Metagenome / Metatranscriptome	245	Y
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10136982	F007837	N/A	LVSGLAVLPKVSARNLSLKLNVVVDLKTTVNPAIINYPAAYQSLAQSILIDNQDAANAVTVRLNRQTNTITIPGGGFRTINDSWIEQIDLTGPSTNTQLTAQISPLSQISPYGGGVTN
Ga0208030_10136983	F016759	GAG	MSMEPIQRQMTNPAVGALNTPALLQDNVTLLTFIQLNIPNTILDMYNSPDPAAAADFYTYELQKNSISTGRNFFSTAMSTASAGRAAVGPIRLASGQLQMQGTPVGAAAPINDQNIVIKFANGF
Ga0208030_10136986	F055296	N/A	VENMAKYDKFREIQQGRNKKIGQRLNELIEKEVKEADPQFKELTAIRSKDAPDIIIPNPFVMDQFHSIPKWIEYMQTLTKEEHGELYNHLLALKLVTHEFEDFRLE