Scaffold Ga0208030

Basic Information
Taxon OID	3300025282 Open in IMG/M
Scaffold ID	Ga0208030_1011798 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025282 Open in IMG/M

Scaffold ID

Ga0208030_1011798 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3188
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3188

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.38	Long. (^o)	4.65	Alt. (m)	Depth (m)	2720
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.38

Long. (^o)

4.65

Alt. (m)

Depth (m)

2720

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10117981	F003270	N/A	AFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPSGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVMVQNRSQTNRAFATAQRNRSFVPLDSFDYSTGSAFR
Ga0208030_10117983	F002100	AGGAG	LSQIPRDSFSPALIKPTYNVGDYGHDVIIPLNCITGSATTTLTPSTATFVQVLEDGKVPVDEVNQFITDSDKMELVHAGNDSDFDTTWEWLPDMSFQAYKASFSVAVAMKVSAYTSGNFAISSVQLTMKSIGGGEGNEVIVDKIINPGMANMTGVAEQVAILNVDTKTSAKISDKEVSVQVKVNTSSGTGTYQCGIIPLFCYFGAAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0208030_10117984	F025299	AGGAG	MIIEEIPYFVEFIVLGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLNIVDKFGV
Ga0208030_10117985	F002150	N/A	MVSVAVPGMIASKTAKKSGQILQEQFGYNFIDLITKLAIFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQQTYSATPTAPGQFNPPGWDRPYDYGSLEHQEAEPHLFPQKEQQFRFWDLINAMAIFYISWEAYKYWKRGGNDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208030_1011798

Overview

Ecosystem & Geography

Associated Families

Sequences