Scaffold Ga0208030_1004209

Overview

Basic Information

• Taxon OID: 3300025282
• Scaffold ID: Ga0208030_1004209
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6381
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y
F029745	Metagenome	187	Y
F073421	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10042091	F073421	N/A	PRRKSMGYRSHVVLAISKHLTPFLMLATAKNKETEALVFKYADNFDRDYEGDKSWLLVWDSIKWYDAYEDIGTLCKFIDEAVCDEYEFEVDGKPQSSAEHIRFVRVGEESGDIEMLGDGFWDIYTHTNICY
Ga0208030_100420911	F029745	GAGG	VRRKAPQIGDIVKPSVPSETLAGYIVAKEGIHVWVRFFDTKFEDGDFWDVFTRRDNLEVISRANSH
Ga0208030_10042092	F014465	AGGAG	MKPRGMSMIGALVRDCSMIMKIVTGYKCSNRGEYIQFAGDPATAWYPLGEYEILSMED
Ga0208030_10042094	F024106	N/A	MMDFQVGDLVTLKHHPGAPIAIVVSLDAIVFGRIQIQFFDTDRPEMAEPEHWKVVSRNAS