Scaffold Ga0208030_1003178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208030_1003178

Scaffold Ga0208030_1003178

Overview

Basic Information
Taxon OID	3300025282 Open in IMG/M
Scaffold ID	Ga0208030_1003178 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7747
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.38	Long. (^o)	4.65	Alt. (m)		Depth (m)	2720
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011305	Metagenome	292	Y
F017321	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10031781	F011305	N/A	MKLIILLLTLFMIGCGGMSVKPHKTSVTYGIADTEKDNGKDSVKESFTMKQDFIWED
Ga0208030_100317816	F017321	N/A	MLIVIPRNRNIGEQMTKAQFHDIVKLGFFSIKWLKNNGEVGHIKRGIIGQNGYRFTKSGEVREHPNYLLVFCVSNKGEHGWANVNPDTILEINNVSYPQ

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