Scaffold Ga0207881_1016783

Overview

Basic Information

• Taxon OID: 3300025281
• Scaffold ID: Ga0207881_1016783
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-97 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1307
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium AD-802-F09_MRT_200m (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 9.2013
  • Long. (^o): -163.4956

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F022524	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207881_10167832	F003481	GGAG	VAEIDDLREELERLKAPTSDKGDKIQMTSGDIVRLIIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTAILSSLFRVDGNGR
Ga0207881_10167833	F022524	GGA	MTLFEKICRLIGDRRIPSPRMPAFKLFKLPAFRLFTVGFANKHVTTVVVMAIAVSAAAVSVGLYFAIKDVASSTYNWPEAATYQVTEAGLQTMGKKNEDYPDGTESQTLSIRL