NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208449_1151165

Scaffold Ga0208449_1151165


Overview

Basic Information
Taxon OID3300025280 Open in IMG/M
Scaffold IDGa0208449_1151165 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006918Metagenome362Y
F091885Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208449_11511651F006918GAGMRDFSITRKKGELYHAIVTDSYGNKYENFFEHAHEANDWIYYIWSKEEWFNSANS
Ga0208449_11511652F091885N/AMNDITGIVVQNILQEKLNKYQIYHNSSYQYGDYDMSDYYAARIKELKIKLSKLV

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