NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208449_1041640

Scaffold Ga0208449_1041640


Overview

Basic Information
Taxon OID3300025280 Open in IMG/M
Scaffold IDGa0208449_1041640 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1279
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033590Metagenome / Metatranscriptome177Y
F033600Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0208449_10416402F033590N/AMGKFENKFLSLLLEDEFDTAEPSAAPAPALAPAIDAAPEDDRQSFANALDEPDHAEDFEDVIDSNPNEQEELNDLQEWITNIDEVIKYLNGGISSVLGKLRDDNKVGTIYADVSDATKNDILDVCERLAGLNQIFKNLYIEKHK
Ga0208449_10416403F033600N/AMMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAKASPATYNQISADLIPFPGDHLIEQLGSAYKSIADATGLLVTLSENPSTHLDEKVVKSATLK

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