NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208449_1034431

Scaffold Ga0208449_1034431


Overview

Basic Information
Taxon OID3300025280 Open in IMG/M
Scaffold IDGa0208449_1034431 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1460
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060347Metagenome133Y
F093221Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208449_10344311F060347N/ASLRILMDRKRKAYAPFSQTSEAGVAQTPVEGYIDVSQMIYPVVQTGVVNEKGQWTGVKSSDDDFFDITKHVAVPNTGETLSPDTGTSNFIDMTGFTDIQLAIKPTNTGNYKIEAVMGPDTNRYANLSPVNAGTRLRGIPANQPDMEDWVIDSAEALADTWNIFYIERRLQNQKLLQFKITNNSGGESTFEVAFMRMV
Ga0208449_10344313F093221GGAVKIVELLAIPIGFALVRSITKNIKDEPAPKKIVPTGFTLGPAAASMDIAPIIPEGAFKITPTQLEAFTPERKVTIPTFDPTLPIAKPIKEGKIKKFGTGVSLADLLARAK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.