Scaffold Ga0208449_1031924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208449_1031924

Scaffold Ga0208449_1031924

Overview

Basic Information
Taxon OID	3300025280 Open in IMG/M
Scaffold ID	Ga0208449_1031924 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1538
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.31	Alt. (m)		Depth (m)	2520
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012240	Metagenome	282	Y
F059354	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10319241	F012240	AGGA	MDNEINDRSVNPLIRIANALEEILRLVKADQEKMEKYRNLINGE
Ga0208449_10319242	F059354	N/A	MMSKKKWDKLPLMTWKFTMYREDEKGNQKFYEYTGDHSGFCDGIDNEDLVELDKEDA

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