Scaffold Ga0208449_1029901

Overview

Basic Information

• Taxon OID: 3300025280
• Scaffold ID: Ga0208449_1029901
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1611
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F002744	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10299011	F002744	N/A	YPINTPLAGGEHLNFYAQPLTQNTAAAGVGATVIYDTISPNGVEQYYTRPTNETQGATAINTRTQGGDMTIQGGTEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTATGLGSNANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0208449_10299012	F000704	N/A	MPHIDDRLEPSKVKSVSVYNVGDYGMDLFLPFTDVGLTETSITFSTATLTRDLEDSNQPMDDFPAVYSDTDSGILLNEGNDTAFSQTYSYNPDMTAIIYAIHLSFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSDAANLTGTGTSLHIFQRDVVETILVRKGNPIDILVELVTVTTGTNTRQEGIVNLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ
Ga0208449_10299013	F000730	GAG	LVNELLPAELVPLVWFSVISVTVYVFFRVFSSTLKEKFRQTNLSRKKAESSGHTDDQIDDLINNAPTALNHVNSIIAEQKAKGVSDEQMKGIYQKKQMLELVTNNAEVINII