Scaffold Ga0208449_1010156

Overview

Basic Information

• Taxon OID: 3300025280
• Scaffold ID: Ga0208449_1010156
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3359
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F048570	Metagenome	148	Y
F081216	Metagenome	114	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10101561	F081216	N/A	MDFQVGDLITLKHFRGNPEAPPPLAVVIGTEAIVFDRIMIQFCDSSRPEMAAPEHWVVVSRDETRRLAEV
Ga0208449_101015612	F027156	GGAGG	VIPKVGQLLRWYDNFTLDCDSPEHDIGIVKEVQLEGENFFGNDEYQYVVIVDWCKGPHHSYHDQEEWEESIQTNEIVVVV
Ga0208449_101015614	F084099	GGAG	MKIGDIVRMNHALTPERYGLGLVQKIVETQQTFANGGTRLVYHILWPDGGISCQFDTEIVLVGKVE
Ga0208449_101015616	F048570	GGAG	VKIGDLVRCLPRSEHENYDEWLGLIIGEPAIGVTVAVQWVCSDGRGDVETVNHTPEELVLVNGNR