Scaffold Ga0208449_1001876

Overview

Basic Information

• Taxon OID: 3300025280
• Scaffold ID: Ga0208449_1001876
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10674
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016735	Metagenome	245	Y
F042083	Metagenome	159	Y
F077162	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10018762	F016735	GGA	MTDATFAAIWILSFGLYLLIYTYWIPLKTQKKIEHWLMSEESDETLLASLGVITNKIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAQKLGDTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVISKAAQNQDKTEATKVVHGKFGFD
Ga0208449_100187624	F042083	AGGAG	MARRRMAIPHPSITGMASGLAVANYLNQGTSVGAGPTLSKGVIKSTLDGNLNAAFSDLSKNAVDLATSPGGKAVLSSAIVLATAGGIARKWFPSVKLGGTKLYFKI
Ga0208449_100187627	F077162	N/A	TEELKDQPWYVQAAASKLIPVIQKAADNQDKPKVTKLVHGKFGFD