Scaffold Ga0207417_1060584

Overview

Basic Information

• Taxon OID: 3300025278
• Scaffold ID: Ga0207417_1060584
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-82 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 589
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -25.4941
  • Long. (^o): -179.5286

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072422	Metagenome	121	Y
F075975	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207417_10605841	F075975	AGGAG	MADMGPYLAEKYTKMIEAITNDLGRTADKLAFAQNILRALKNPDMLMDGAPLTLERLQVMENGDIRTLPPPPEMTCVEEVTKEFGKNGKKEKEAVLASDPA
Ga0207417_10605842	F072422	AGGA	VTLLSTDTYEDAQYQNDAPIGPQEPIPTGVHSIELSWDRSRGYMRIMIGDQKWWFKEYLGKAVV