Scaffold Ga0207417_1037009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207417_1037009

Scaffold Ga0207417_1037009

Overview

Basic Information
Taxon OID	3300025278 Open in IMG/M
Scaffold ID	Ga0207417_1037009 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-82 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	799
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-25.4941	Long. (^o)	-179.5286	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003936	Metagenome / Metatranscriptome	461	Y
F038418	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207417_10370092	F038418	N/A	MTDKNEQWIWFINKENPKRISRTTLGSFLKDINKGLTTRNTSIQDAKKCVFLTRMDFRKPYIFFCTYLDARKWKARTIQ
Ga0207417_10370093	F003936	AGGAG	MLETFEIFWTAKIELRVVILATLIVGCFWYWQDHKRKQKDKHQERLNQIK

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