NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208180_1119122

Scaffold Ga0208180_1119122


Overview

Basic Information
Taxon OID3300025277 Open in IMG/M
Scaffold IDGa0208180_1119122 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.24Alt. (m)Depth (m)2766
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020998Metagenome / Metatranscriptome221Y
F028937Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0208180_11191221F020998GGAGGMPANGRTDTRPGYIFDHHKKLVEELYSILDQAAVEYDFSEDVVDDFTAYLKDWAKRRDER
Ga0208180_11191222F028937N/ANHAVEFITAGILPVPMGRELIGWIHELRDRFYREINQAPVMPLHYCYEHDQERRRSKTGKWGHILPKQADDEEDAYCVEHREGWRIFDASQR

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