Basic Information | |
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Taxon OID | 3300025277 Open in IMG/M |
Scaffold ID | Ga0208180_1043600 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1189 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 7.24 | Alt. (m) | Depth (m) | 2766 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012401 | Metagenome / Metatranscriptome | 281 | Y |
F090254 | Metagenome | 108 | Y |
F106167 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208180_10436002 | F012401 | GGAGG | MVEGLLSLEKAALERLTEDRIASGSLGAEVEEILFSAGVYWDEIGQEYFSIDAFQKEIFERLTQEYLSENYA |
Ga0208180_10436003 | F090254 | AGGAGG | MSIPKTNYTAREILEIVDGGEFVSILRDKYLVVWDGGSVVNVHDLTDPDKQPDYQVLPMFAPRCMLTVHDAIDDYFEALDFDNENEGLTTDPIRVIVNTESDDPLEVN |
Ga0208180_10436004 | F106167 | GGAGG | VEIGDIVKLHINPSVDWMHKYLEETFEVIDFPTESGVRVKMVGTDPEWQWIIGKADFKIVKEEDE |
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