NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208180_1043600

Scaffold Ga0208180_1043600


Overview

Basic Information
Taxon OID3300025277 Open in IMG/M
Scaffold IDGa0208180_1043600 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1189
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.24Alt. (m)Depth (m)2766
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F090254Metagenome108Y
F106167Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208180_10436002F012401GGAGGMVEGLLSLEKAALERLTEDRIASGSLGAEVEEILFSAGVYWDEIGQEYFSIDAFQKEIFERLTQEYLSENYA
Ga0208180_10436003F090254AGGAGGMSIPKTNYTAREILEIVDGGEFVSILRDKYLVVWDGGSVVNVHDLTDPDKQPDYQVLPMFAPRCMLTVHDAIDDYFEALDFDNENEGLTTDPIRVIVNTESDDPLEVN
Ga0208180_10436004F106167GGAGGVEIGDIVKLHINPSVDWMHKYLEETFEVIDFPTESGVRVKMVGTDPEWQWIIGKADFKIVKEEDE

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