Scaffold Ga0208180_1037226

Overview

Basic Information

• Taxon OID: 3300025277
• Scaffold ID: Ga0208180_1037226
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.24
  • Depth (m): 2766

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F010737	Metagenome	300	N
F100046	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208180_10372261	F005551	AGGA	MTLGPSKSVSRAKDGKIYGWSGSKGLTSSAVTLLDYTNPAAFYLTRVTLGVDWSGISDGEVLSYTINVDDQALFVEKLVVLVNNIGIQPKMFEFIIPPNSTVKIQATESANNGAI
Ga0208180_10372263	F010737	GGA	MSSSSLGNIQTPQGSTRISRIDVAMDAPDTKGVVLAGRLLGSNMSEQNLSLAGSCGDVADAGGTAQFNMIPTNFSVVGVNNIDLQVAFQFTSGTPTASSLSVTLYFE
Ga0208180_10372264	F100046	N/A	TAFSTLSHNAINMIASDGGRKTLVTASGIAILGAFARKQFPNLKLGGSKLYFRI