Scaffold Ga0208180_1003889

Overview

Basic Information

• Taxon OID: 3300025277
• Scaffold ID: Ga0208180_1003889
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6001
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.24
  • Depth (m): 2766

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027019	Metagenome / Metatranscriptome	196	Y
F089009	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208180_10038891	F089009	N/A	KTVVQHRTVVQVDGINARTNKPFVQYTTDYKRRKSQGKAVKKGQSQRSNKVNPPNLTLTGQMMDSFKFIRASNSGFIYGITDSRQAQKLTGNQTGHYGKNTNTRKKRIVSDKENPLPIKVKDKVGAAIAGKIAQNFKDVFTSKGYVVNIIRM
Ga0208180_10038893	F027019	AGGAG	MAISDALDVNVHSGGTGAVTPNIADQFIPEIWGQAILDVFQQTIMMDNVGIDLSPDVASHGDVIHMPHIGVPELEAFTHGAEIDADVTSAGSMTSEQTNLTIDQYNVASAYVPDIVEVQANYDLLSIYAKQLGYACARGFDNFLHYQVANNFQGLLASATGAIGGDANTSMHIQSTGSALSQANLTSLMALMLGETGSTDGWHLVLSPDMYSSLNTLTSYSQGTQAPLGADFGRSGNAGSLLGMPVWVAQSPYMGSASGGADVAADATKGILAVADLETSGTDDNDIVYGYVIHESALYYAFSKQAKMTASYRHAYLSTLVTCESVYGGAIRNTDADGNRRAFAIVDYE