Basic Information | |
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Taxon OID | 3300025276 Open in IMG/M |
Scaffold ID | Ga0208814_1008625 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3763 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | South Georgia Island | |||||||
Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019558 | Metagenome / Metatranscriptome | 229 | Y |
F057687 | Metagenome | 136 | N |
F067206 | Metagenome | 126 | Y |
F076508 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208814_100862511 | F067206 | GAGG | MDNSVDFNNIYITHLGVKVSVAQHRDADPMATKYQEIGIGEPSVDMPIIRYGSTLDELISALQKARYKIEQGQEHEG |
Ga0208814_10086253 | F019558 | GAGG | MSVMAYEVMLELDGVRKVITLDDTYPAVHDWKTATEFAIHMAQHDHPDAQIEFMDCAEYVHEEYTQYGYIHEAPIVLQ |
Ga0208814_10086254 | F057687 | AGGAG | MAKPMQTEAKEMTPHEKWQMKRDAANAERNFNADQLSDSQRKALMDAFTAIRGCDFSFHEMFMADVSDMIAIDKAEYQLRSEFPQLTEEAVSDMTCTCED |
Ga0208814_10086258 | F076508 | AGG | MTHSFLIYQRPVDAELQADLNHDIQSPRAKAYFNIARVGMGHEPDTAVAEAIKHELYQPTMFMIGMGDQTRDTMEHIFDAGNDHGNGDLSVEHIRKHSSMSVGDLVVNLLDNSVQVCMPMGWYELFDTSLNITPA |
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