NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1008625

Scaffold Ga0208814_1008625


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1008625 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3763
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019558Metagenome / Metatranscriptome229Y
F057687Metagenome136N
F067206Metagenome126Y
F076508Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100862511F067206GAGGMDNSVDFNNIYITHLGVKVSVAQHRDADPMATKYQEIGIGEPSVDMPIIRYGSTLDELISALQKARYKIEQGQEHEG
Ga0208814_10086253F019558GAGGMSVMAYEVMLELDGVRKVITLDDTYPAVHDWKTATEFAIHMAQHDHPDAQIEFMDCAEYVHEEYTQYGYIHEAPIVLQ
Ga0208814_10086254F057687AGGAGMAKPMQTEAKEMTPHEKWQMKRDAANAERNFNADQLSDSQRKALMDAFTAIRGCDFSFHEMFMADVSDMIAIDKAEYQLRSEFPQLTEEAVSDMTCTCED
Ga0208814_10086258F076508AGGMTHSFLIYQRPVDAELQADLNHDIQSPRAKAYFNIARVGMGHEPDTAVAEAIKHELYQPTMFMIGMGDQTRDTMEHIFDAGNDHGNGDLSVEHIRKHSSMSVGDLVVNLLDNSVQVCMPMGWYELFDTSLNITPA

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