Scaffold Ga0208814_1008426

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1008426
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3817
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F038864	Metagenome	165	Y
F057680	Metagenome / Metatranscriptome	136	Y
F061291	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100842610	F007611	N/A	MSRIKWITVLDYSSGRVFQYRVSINKHAEEYIIFKNHRLKDVEWMEHSDSRLITN
Ga0208814_100842612	F038864	AGG	MKIDKKLIVSVLELYKLEIVKRDISEHDQTLEILIKVNEQIKLIKEWKK
Ga0208814_10084264	F057680	AGAAG	MTRLIDKIKPEVLRALDRHCKPHYPTSHRMIITSLQDITHYRDLTIEQVNNLITFLPSEFKPKGDLDMFYGDNILLGKYIVK
Ga0208814_10084265	F061291	N/A	MKTKEELEQAIVMHEEALESSRHCVIVDTQDLEQAKKELKQLNKPVISGEQLDNITMAIEKAVGNFNFDDADNYALEFGIDYNSKVVAESFEFQNAQELIEAIMESVHSLFVEKQEDND
Ga0208814_10084269	F001802	GGA	MNTIKQLKNNYLQLGNAIYRPYTVCELPANFGCISFNEKEGISEWFNYKGFTYLYEAMAK