Scaffold Ga0208814_1008053

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1008053
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3918
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N
F087749	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10080533	F087749	AGGAG	MNQTSRPWTVQCFHGTAYVDYYMHRHDFHDVVLSYEYDRKEWYSRTRTSLVTIEKDTPFNDGKELSKDMTKKLIKIMESNYESPNKNHTTNAQQKHHRRQ
Ga0208814_10080534	F059448	GAGG	VLDIGFKTIIEVMKQGSWLTDLEVATRARMKIDTALYYLRRLRRLGLIVSEWVHEQRVWGVINCT
Ga0208814_10080536	F066148	AGGAG	MNNHLSEVAEGIIEACPTQLNPDDMSTLIAYMVWSYNMQGDWDDMLPKIVRCINLDDGHARIVRVANRDANKFMDKVLGDISNARRS
Ga0208814_10080538	F038862	GGAG	MSTKAWHISYLSAIVGPCAATTDDGCMAWSDENDEINFVMRLLDRDNNAENLLLVIQPEMDEIQIYTLTGYCISNDLPYMIKDWDALSEEGQKEAQKTRH