Scaffold Ga0208814_1007450

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1007450
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4094
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007947	Metagenome / Metatranscriptome	342	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017047	Metagenome / Metatranscriptome	243	Y
F032478	Metagenome / Metatranscriptome	180	N
F035971	Metagenome / Metatranscriptome	171	N
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10074501	F007947	GGAGG	MLDCHTILCVYNQMPSFGWDDLFIVGYLGIGMTVVVYLM
Ga0208814_100745011	F017047	AGGAG	LATTYKDELVQTLWDLFKEVHGVRPRGMGYEKYSVTYLEHKVTRLQRFLEEEIRHEREMEDRAIKSCMECGASDIATAMRWLEDGRYV
Ga0208814_10074503	F032478	AGCAG	MYWEIGIKMDGVSGVYNVHPQPLEQPLWNHAVEHAMDMAQALYPDSHIEMEFVKEFDAYE
Ga0208814_10074505	F035971	AGGAG	MGKEERDAEIYGRYLALYGCTPLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQKQAQHFINRAKYVIRHIKSDSGLVTTPTTNTQQTNQ
Ga0208814_10074506	F012403	GGAG	MRITKINPVAKALLQSRRRTSTVPDKTKYNRKKDKQDANQNHTNEKPKDN
Ga0208814_10074507	F037204	AGGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIIDYLQFIHNTEKGNENYKD