Scaffold Ga0208814_1006826

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1006826
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4325
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017161	Metagenome / Metatranscriptome	242	Y
F077487	Metagenome	117	N
F087740	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10068261	F077487	N/A	AELAFAKATNTYFNGSYSDQYSRYTDSDMQNQIEIRSQKRKDYNFLLIRPGEKKARYVLVIDEGDFEFTLIGWFPFINDMPEKLSNFGFVNRPPAYKIEIKELYPLADLKT
Ga0208814_10068265	F017161	N/A	MQKVGKPKDWILFKHDPAHEKSINIDFSGTINLTNGFKGTVLASKGVSKNGNTKFLRLFKQTGVLFLGDEGKFTGDMTDVEIGGKKALIGWSNDKSETPHISGYANEPQVKEEAKDDKAP
Ga0208814_10068269	F087740	AGAAG	MTRQTKKTFQLLSILKKCREKSKFGLAKKLISKYKIDKKKLEESYYD