Scaffold Ga0208814_1005946

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1005946
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4674
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007947	Metagenome / Metatranscriptome	342	Y
F016061	Metagenome	250	Y
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10059461	F003073	AGGAG	MPKKLENMTQDERIEYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYQLVDEILDTAMYPDLGGIKAVTAYDLQELADAKDRLRHEFNFDVREHG
Ga0208814_100594613	F016061	AGGAG	MFLQVKMTNFLNAVAGRKPSIDRINYAKFNHKGRYYVGSSENGKFLQVNDGLHIRYYGNPFYNLHRIVSKNGNDFVVHEVNR
Ga0208814_10059464	F002430	AGGAG	MMTIKLPKKQVNAILVALDAEIEMQLGGRPIDWESFPEVAALMMAYYTTRCKFEEEIDNE
Ga0208814_10059467	F074150	AGGAG	MPKYEVTRSYTVACVATVEAESAEQAKRMAFECYDLHWKEYDGDYGTEVDVEEIDT
Ga0208814_10059468	F007947	N/A	MLDCHTILCVYNQMPSFGWDDLFIVGYLGIGMTVVVYLMIEAWKGD