Scaffold Ga0208814_1005509

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1005509
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4899
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038423	Metagenome	166	Y
F040181	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10055094	F038423	GAG	MTEHDNFIFNLERKQIRVKEAIKEYKKQWLSGTASQPLKKQQKQDSGSTLKAKLLAKK
Ga0208814_10055095	F040181	AGGAG	MGFDWMGNDGDTYRSLKGIANKGGYFGSVNQANFWMRCAQESGVHAGPCFSWGDSVELEPGEFFFFCEGSISANYTTQAGVQRGWGRKTRYKTWGFVVDAAGVNLIYQLYRSYNDKDGGSGPNAARTEVIWRRDNQAVEATIAGFEALRAERAAKIAEAKAQSKYVGEIGERIDIEGVARLVSSRDGRWGTTNLYIIKTTEGNTLKYSGSNHYGEKAKITGRFTVKQHTEYNGELQTVINRPHKVESEILDDGA