Scaffold Ga0208814_1001197

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1001197

Scaffold Ga0208814_1001197

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1001197 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12597
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (46.51%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019389	Metagenome	230	Y
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10011974	F019389	AGG	MDNWKDDFIKFVNKMSKKKGWKCDDMNPYFHRLNLLHLSSAKTLREYKQQQKGTHENK
Ga0208814_10011976	F087744	N/A	MTKNILVTFDMQVGDYEHSDKYIFHNKTTDYKYCKQFWNLKKKNKLDEGVYWDNQELNAISVYSIQEITEQETKTLKRLGVA

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