Scaffold Ga0208814_1001110

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1001110
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13262
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F074019	Metagenome	120	N
F087187	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100111015	F041192	N/A	MECLEAMSWALKGEHLRVYPVLTNENYTHKVGKKTRNLPKVRLVIEIGNAKHQGKEVYKQHEFSEKVCEIYMHYYNKRTI
Ga0208814_100111025	F087187	N/A	MYTTLVVNNDRYLINTMVCDLSQDKACETILQDYPSDADIHFEIPTKEDIV
Ga0208814_10011107	F074019	N/A	MMTLPTIEFLQKGADTTLICDVLGKWLDAKPDNKELGAMYNAFLRVFVYTNNLELRDYGFNRLISEARNSRNNAVLRARKAEEALEAAEAKVKDLEAKLKIFGI