Scaffold Ga0208814_1001045

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1001045
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13851
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F002682	Metagenome / Metatranscriptome	537	Y
F006000	Metagenome / Metatranscriptome	384	Y
F031659	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100104511	F002682	AGG	MGKQVGSDEKPMTFRSPIYKNTHGCKGANPRPGVYTKQYRDNWDVIFGKKDGNEKKEK
Ga0208814_100104513	F001521	AGAAG	MKLWITEHVNNEGTAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEIKIKKRVVH
Ga0208814_100104517	F031659	GGAG	MKSKCKNPNGLHNLKAIIGGQTMDTLKFNSLDKAKRHLKSEGYRFNKAFNCREDKAMFYQGRYGWVKLTSTFDYLNKTSMEQGTVWNIVKL
Ga0208814_10010456	F006000	AGGA	MMNQNARRVIRVVPVITADAYADNDVLFNNTEIPLAVGKSGECSKLVSAMIISKSTQVFDGELFFCQTTQSVGAANSARNISDADFAAAKVLGRLTLDGSADDYTYGGGKVFNFDINLEGAGATDGDVVSKQRFPLLLQAAAGTTSVFCFMLLSGTDVTPNMSVGDLELVLGVEY